% ----------------- % Copyright © 2020 ACK Cyfronet AGH, Poland. % % This work was partially funded by EPOS Project funded in frame of PL-POIR4.2 % ----------------- function csvFiles = gdf2csv(gdfFilePath) csvFiles = {}; load(gdfFilePath); [~, resultFileNameBase] = fileparts(gdfFilePath); fieldNames = fieldnames(d); fieldTypes = getFieldTypes(FieldType, fieldNames); if (hasSingleData(d, fieldNames)) if (length(d) > 1) M = prepareCellMatrixFromStructArrayWithScalars(d, fieldTypes); else M = prepareCellMatrixFromSingleStructWithVectors(d, fieldTypes, fieldNames); end resultFileName = [resultFileNameBase, '.csv']; saveCsvFile(M, fieldTypes, fieldNames, resultFileName); csvFiles = { resultFileName }; else for i = 1:length(d) resultFileName = [resultFileNameBase, '-', num2str(i), '.csv']; M = prepareCellMatrixFromSingleStructWithVectors(d(i), fieldTypes, fieldNames); saveCsvFile(M, fieldTypes, fieldNames, resultFileName); csvFiles{i} = resultFileName; end end end function isSingle = hasSingleData(d, fieldNames) isSingle = length(d) == 1 || ~hasAnyVectors(d, fieldNames); end function hasVector = hasAnyVectors(d, fieldNames) hasVector = false; for i = 1:length(d) vectorValue = findFirstVectorValue(d(i), fieldNames); if ~isempty(vectorValue) hasVector = true; return; end end end function vectorValue = findFirstVectorValue(d, fieldNames) vectorValue = []; for i = 1:length(fieldNames) value = d.(fieldNames{i}); if ~ischar(value) && ~isscalar(value) vectorValue = value; return; end end end function saveCsvFile(M, fieldTypes, fieldNames, filename) lineFormat = getLineFormat(fieldTypes); fid = fopen(filename, 'w+'); fprintf(fid, '%s\n', strjoin(fieldNames', ',')); for k=1:size(M,1) fprintf(fid, lineFormat, M{k, :}); end fclose(fid); end function M = prepareCellMatrixFromSingleStructWithVectors(d, fieldTypes, fieldNames) % some structures might contain vectors mixed with scalars, in that case we want to repeat the scalar values in the csv file d = convertScalarsToVectors(d, fieldNames); M = cell(length(d.(fieldNames{1})), length(fieldNames)); for f = 1:length(fieldTypes) fieldType = fieldTypes{f}; field = d.(fieldNames{f}); if (isTime(fieldType)) M(:, f) = formatTime(field, fieldType); elseif isnumeric(field) if (isrow(field)) field = field'; end M(:, f) = num2cell(field); else if (isrow(field)) field = field'; end M(:, f) = field; end end end function M = prepareCellMatrixFromStructArrayWithScalars(d, fieldTypes) M = squeeze(struct2cell(d))'; M = cellfun(@handleEmptyArray, M, 'UniformOutput', false); for f = 1:length(fieldTypes) fieldType = fieldTypes{f}; if (isTime(fieldType)) M(:, f) = formatTime(M(:, f), fieldType); end end end function struct = convertScalarsToVectors(d, fieldNames) struct = d; firstVectorValue = findFirstVectorValue(d, fieldNames); if isempty(firstVectorValue) return; end count = length(firstVectorValue); for i = 1:length(fieldNames) field = struct.(fieldNames{i}); if (isempty(field)) field = nan; end if ischar(field) || isscalar(field) [vectorValue{1:count}] = deal(field); struct.(fieldNames{i}) = vectorValue'; end end end function value = handleEmptyArray(value) if (isempty(value)) value = nan; end end % creates a vector of field types written as in FieldType, but preserving the same order of fields as in the 'd' % structure (fallback for a situation when the types in FieldType are in different order than fieldnames(d) or when % FieldType contains more entries than fieldnames(d) function fieldTypes = getFieldTypes(fieldTypeCell, fieldNames) fieldTypes = cell(1, length(fieldNames)); for i = 1:length(fieldNames) for j = 1:size(fieldTypeCell, 1) if strcmp(fieldNames{i}, fieldTypeCell{j, 1}) fieldTypes{i} = fieldTypeCell{j, 2}; end end end end