109 lines
4.0 KiB
Python
109 lines
4.0 KiB
Python
import logging
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import sys
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import pandas as pd
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from obspy import read_inventory, Catalog
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from obspy.core.inventory import Inventory
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from pyoctoAssociator import PhaseAssociation
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from catalogConverter import CatalogConverter
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from qml2picks import qml2picks
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from count_picks import count_picks_from_stations
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def main(qml_picks, inventory, velocity_model, lat_min, lat_max, lon_min, lon_max, z_min,
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z_max, grid_hor_extent, grid_spacing, p_vel_const, s_vel_const,
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n_picks=4, n_p_picks=0, n_s_picks=0, n_p_s_picks=0, time_before=10.0, tolerance=1.0, assoc_cut_dist=250.0,
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pick_match_tolerance=0.5, p_hint="P", s_hint="S"):
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"""
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Main function for application: PHASEASSOCIATIONAPP
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Arguments:
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velocity_model: input file of type 'mat'
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qml_picks: input file of type 'quakeml_seismogram_picks'
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inventory: input file of type 'inventory'
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grid_hor_extent: parameter of type 'DOUBLE'
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grid_spacing: parameter of type 'DOUBLE'
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lat_min: parameter of type 'DOUBLE'
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lat_max: parameter of type 'DOUBLE'
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lon_min: parameter of type 'DOUBLE'
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lon_max: parameter of type 'DOUBLE'
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z_min: parameter of type 'DOUBLE'
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z_max: parameter of type 'DOUBLE'
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n_picks: parameter of type 'INTEGER'
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n_p_picks: parameter of type 'INTEGER'
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n_s_picks: parameter of type 'INTEGER'
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n_p_s_picks: parameter of type 'INTEGER'
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pick_match_tolerance: parameter of type 'DOUBLE'
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p_vel_const: parameter of type 'DOUBLE'
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s_vel_const: parameter of type 'DOUBLE'
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p_hint: parameter of type 'STRING'
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s_hint: parameter of type 'STRING'
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time_before: parameter of type 'DOUBLE'
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tolerance: parameter of type 'DOUBLE'
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assoc_cut_dist: parameter of type 'DOUBLE'
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Returns:
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File(s) named 'out_catalog' of type 'data_catalog_csv' and format 'PLAIN_TEXT' from working directory
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"""
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inv = Inventory()
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for inventory_item in inventory:
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inv.extend(read_inventory(inventory_item))
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if count_picks_from_stations(quakeml_file=qml_picks, inventory=inv) == 0:
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logging.error(f"There are no stations in the Station Inventory file(s) corresponding to the picked times. "
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f"Check if the file(s) is/are correct")
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sys.exit(1)
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config_pyocto = {
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"velocity": {
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"path": velocity_model,
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"path_out": "velocity_model_1D",
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"0D_P_vel": p_vel_const,
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"0D_S_vel": s_vel_const,
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"grid_hor_extent": grid_hor_extent,
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"grid_ver_extent": z_max-z_min,
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"grid_spacing": grid_spacing
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},
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"grid": {
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"lat_min": lat_min,
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"lat_max": lat_max,
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"lon_min": lon_min,
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"lon_max": lon_max,
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"z_min": z_min,
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"z_max": z_max
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},
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"params": {
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"time_before": time_before,
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"n_picks": n_picks,
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"n_p_picks": n_p_picks,
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"n_s_picks": n_s_picks,
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"n_p_and_s_picks": n_p_s_picks,
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"tolerance": tolerance,
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"association_cutoff_distance": assoc_cut_dist,
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"pick_match_tolerance": pick_match_tolerance
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}
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}
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config_conv = {
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"P_hint": p_hint,
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"S_hint": s_hint,
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}
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picks = qml2picks(qml_picks, p_hint, s_hint)
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if not picks:
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# Saving empty qml file
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cat = Catalog()
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cat.write("detections.xml", format="QUAKEML")
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else:
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pa = PhaseAssociation(inventory=inv, config=config_pyocto)
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events, assignments = pa.associate_phases(picks)
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if not events.empty:
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events['datetime'] = pd.to_datetime(events['time'], unit='s')
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cc = CatalogConverter(config_conv, picks, events, assignments, "PyOcto")
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cc.catalog2obspy()
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cc.save_catalog_to_file("detections.xml")
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else:
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# Saving empty qml file
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cat = Catalog()
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cat.write("detections.xml", format="QUAKEML")
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